Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8465

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16832 and 16833 are separated by 915 nucleotides mRNA_8464: 16832 - Hypothetical Protein, at 1,295,611 to 1,296,555 16832 mRNA_8465: 16833 - K00293 LYS9 saccharopine dehydrogenase (NADP+, L-glutamate forming), at 1,297,471 to 1,300,237 16833

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,296,479 - +0.4
1,296,481 - -1.2
1,296,549 + -1.3
1,296,561 + +1.2
1,296,577 + -0.3
1,296,587 + +2.8
1,296,589 + +1.3
1,296,608 - -0.6
1,296,619 + -0.8
1,296,640 - -0.4
1,296,650 + -0.6
1,296,692 + +0.6
1,296,763 + -2.3
1,296,767 - +0.5
1,296,767 - +0.9
1,296,785 - +0.0
1,296,785 - -1.9
1,296,789 - +0.0
1,296,807 + +0.2
1,296,808 + +0.4
1,296,811 + +0.6
1,296,813 - -0.5
1,296,826 + -2.0
1,296,879 + +1.0
1,296,894 + +1.7
1,296,930 + +0.7
1,297,029 - -0.8
1,297,033 + +0.3
1,297,080 + -1.3
1,297,109 - +2.4
1,297,180 + -0.1
1,297,183 - +0.5
1,300,375 - +2.2
1,300,388 + -0.3
1,300,395 + -0.0
1,300,398 - +0.4
1,300,404 + +0.4
1,300,407 + +0.5
1,300,420 - -0.6
1,300,551 - +2.5
1,300,552 - -1.8
1,300,678 - -0.1
1,300,830 + +0.6
1,300,978 + +1.1
1,300,984 + -0.3
1,300,996 + +1.0
1,300,998 - +2.2
1,301,008 - -0.2
1,301,012 - +0.9
1,301,012 + -0.1
1,301,013 - +1.1
1,301,014 + +0.7
1,301,017 + -2.1
1,301,029 - -1.3
1,301,042 - -0.0
1,301,044 + +0.6
1,301,048 - -0.1
1,301,058 - +1.2
1,301,064 - +0.1
1,301,067 - -0.5
1,301,083 + +1.9
1,301,140 - -0.1
1,301,145 - -1.0
1,301,197 + +0.0
1,301,201 + +0.5
1,301,201 - -0.7
1,301,209 - +0.2
1,301,217 + +0.4

Or see this region's nucleotide sequence