Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8481

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16848 and 16849 are separated by 188 nucleotides16849 and 16850 are separated by 695 nucleotides mRNA_8480: 16848 - KOG2174 Leptin receptor gene-related protein, at 1,324,303 to 1,324,895 16848 mRNA_8481: 16849 - Hypothetical Protein, at 1,325,084 to 1,327,878 16849 mRNA_8482: 16850 - K00854 xylB, XYLB xylulokinase, at 1,328,574 to 1,331,754 16850

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,324,115 - -0.6
1,324,254 - +0.4
1,324,264 - -2.1
1,324,281 - +0.3
1,324,304 + -0.8
1,324,316 + +1.0
1,324,599 - 16848 mRNA_8480 0.50 +0.8
1,324,718 - 16848 mRNA_8480 0.70 +1.0
1,324,733 - 16848 mRNA_8480 0.73 -1.2
1,324,863 + -1.3
1,325,010 + +0.2
1,325,023 + -1.2
1,325,048 + -0.1
1,325,052 - +1.6
1,325,142 + -0.1
1,325,168 - +1.0
1,325,624 - 16849 mRNA_8481 0.19 +1.1
1,325,633 - 16849 mRNA_8481 0.20 +2.0
1,325,756 - 16849 mRNA_8481 0.24 +0.4
1,325,759 + 16849 mRNA_8481 0.24 -0.1
1,325,841 - 16849 mRNA_8481 0.27 -1.2
1,325,842 - 16849 mRNA_8481 0.27 -0.0
1,326,007 - 16849 mRNA_8481 0.33 +0.4
1,326,065 + 16849 mRNA_8481 0.35 -0.9
1,326,087 + 16849 mRNA_8481 0.36 +1.3
1,326,108 + 16849 mRNA_8481 0.37 +2.3
1,326,146 - 16849 mRNA_8481 0.38 -0.4
1,326,418 + 16849 mRNA_8481 0.48 +0.5
1,326,439 + 16849 mRNA_8481 0.48 +1.0
1,326,456 - 16849 mRNA_8481 0.49 +0.2
1,326,603 + 16849 mRNA_8481 0.54 +0.2
1,326,605 - 16849 mRNA_8481 0.54 -2.2
1,326,621 + 16849 mRNA_8481 0.55 +0.4
1,326,625 + 16849 mRNA_8481 0.55 -3.0
1,326,885 - 16849 mRNA_8481 0.64 -1.7
1,326,918 + 16849 mRNA_8481 0.66 +1.1
1,326,950 + 16849 mRNA_8481 0.67 +1.8
1,326,976 + 16849 mRNA_8481 0.68 +0.8
1,327,238 - 16849 mRNA_8481 0.77 -0.6
1,327,306 - 16849 mRNA_8481 0.79 -0.1
1,327,626 + +1.6
1,327,630 - +1.1
1,327,639 + +0.6
1,327,646 + -0.3
1,327,680 + +1.1
1,327,763 - +0.3
1,327,818 + +0.8
1,327,932 - +0.5
1,327,943 - +0.7
1,327,948 + -1.5
1,327,957 - +0.9
1,327,963 + +2.6
1,327,976 + +0.3
1,327,990 - +0.7
1,328,014 - -0.9
1,328,022 + +1.5
1,328,104 + -0.2
1,328,124 + -0.6
1,328,246 + -1.4
1,328,264 - -0.1
1,328,268 - +1.9
1,328,274 - -1.1
1,328,274 - +0.0
1,328,275 - -1.8
1,328,281 + +0.9
1,328,281 + +0.4
1,328,813 - +1.0
1,328,815 - +2.4
1,328,821 + +0.5
1,328,821 + +0.4
1,328,847 - +0.4

Or see this region's nucleotide sequence