Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_24

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8391 and 8392 are separated by 964 nucleotides mRNA_23: 8391 - K02938 RP-L8e, RPL8 large subunit ribosomal protein L8e, at 62,374 to 63,560 8391 mRNA_24: 8392 - Hypothetical Protein, at 64,525 to 65,394 8392

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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63,971 + +0.0
63,972 + -0.1
64,112 - +1.4
64,113 - -0.1
64,114 + -1.4
64,127 - -0.7
64,134 - +2.1
64,230 - -0.1
64,243 - -0.8
64,264 + -0.6
64,279 + -0.1
64,412 + +1.9
64,548 - -0.1
65,028 + 8392 mRNA_24 0.58 -0.3
65,182 - 8392 mRNA_24 0.76 -0.1
65,299 - 8392 mRNA_24 0.89 +0.5
65,406 + +0.5
65,431 - +0.1
65,610 - +0.2
65,614 - +1.5
65,692 + -0.7
65,746 + +1.3
65,755 - -0.4
65,776 - -1.9
66,086 + +2.6
66,169 + -2.0
66,170 + -0.3
66,291 + +0.0
66,294 - -0.6
66,306 - +2.8

Or see this region's nucleotide sequence