Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_27

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8394 and 8395 are separated by 449 nucleotides8395 and 8396 are separated by 452 nucleotides mRNA_26: 8394 - K04499 RUVBL1, RVB1, INO80H RuvB-like protein 1 (pontin 52), at 68,110 to 69,853 8394 mRNA_27: 8395 - K00088 IMPDH, guaB IMP dehydrogenase, at 70,303 to 72,461 8395 mRNA_28: 8396 - Hypothetical Protein, at 72,914 to 73,928 8396

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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70,040 + +1.0
70,172 + -0.9
70,173 - +0.7
72,795 - +0.8
72,811 - -1.4
72,924 - +0.1
73,108 - 8396 mRNA_28 0.19 +0.5
73,204 + 8396 mRNA_28 0.29 +0.1
73,217 + 8396 mRNA_28 0.30 -1.0
73,300 + 8396 mRNA_28 0.38 +0.1
73,401 - 8396 mRNA_28 0.48 -0.3

Or see this region's nucleotide sequence