Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_54

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8421 and 8422 are separated by 453 nucleotides8422 and 8423 are separated by 108 nucleotides mRNA_53: 8421 - K03014 RPB6, POLR2F DNA-directed RNA polymerases I, II, and III subunit RPABC2, at 126,911 to 127,593 8421 mRNA_54: 8422 - KOG1505 Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases, at 128,047 to 129,356 8422 mRNA_55: 8423 - HMMPfam-Endonuclease/Exonuclease/phosphatase family-PF03372,SUPERFAMILY--SSF56219, at 129,465 to 130,938 8423

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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127,637 + +1.0
127,716 - -0.1
127,733 - +0.3
127,779 - -0.8
127,892 + -2.7
127,908 - +1.3
127,913 + -2.7
128,042 + -0.4
128,185 + 8422 mRNA_54 0.11 +0.2
128,195 + 8422 mRNA_54 0.11 +0.8
128,199 + 8422 mRNA_54 0.12 -0.4
128,340 - 8422 mRNA_54 0.22 +1.1
128,484 - 8422 mRNA_54 0.33 -0.8
128,488 - 8422 mRNA_54 0.34 -1.8
128,618 - 8422 mRNA_54 0.44 +0.2
128,981 + 8422 mRNA_54 0.71 +1.1
129,214 + 8422 mRNA_54 0.89 +0.0
129,267 - +1.8
129,346 - +0.1
129,406 + +1.8

Or see this region's nucleotide sequence