Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_77

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8444 and 8445 are separated by 57 nucleotides8445 and 8446 are separated by 112 nucleotides mRNA_76: 8444 - K18164 NDUFAF7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7, at 182,247 to 184,330 8444 mRNA_77: 8445 - K13121 FRA10AC1 protein FRA10AC1, at 184,388 to 185,510 8445 mRNA_78: 8446 - HMMPfam-NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)-PF07225, at 185,623 to 186,207 8446

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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184,330 + -0.1
184,412 - -0.8
185,119 - 8445 mRNA_77 0.65 -0.8
185,286 - 8445 mRNA_77 0.80 -0.1
185,407 + +0.0
185,545 - -0.8
185,581 + -0.7
185,599 + +1.0
185,605 + -0.1
185,605 + +0.6
186,205 - +0.5
186,211 - +0.4
186,215 + +2.4
186,216 - -0.7
186,217 + -0.7
186,248 - +1.5
186,249 - -0.9
186,259 - -0.0
186,289 - +0.4
186,291 + +1.0
186,311 + -0.8
186,338 - +0.8
186,351 + -0.1
186,354 + +0.2
186,354 + +0.3
186,354 + +1.0
186,359 - +0.2
186,385 - +0.3
186,386 - +0.7
186,388 - +0.2
186,392 + +2.1
186,412 + -0.8
186,416 - -1.1
186,422 - +0.3
186,427 + +1.0
186,483 + -0.0

Or see this region's nucleotide sequence