Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_96

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8463 and 8464 are separated by 119 nucleotides8464 and 8465 are separated by 195 nucleotides mRNA_95: 8463 - K14408 CSTF3, RNA14 cleavage stimulation factor subunit 3, at 224,693 to 228,325 8463 mRNA_96: 8464 - KOG4031 Vesicle coat protein clathrin, light chain, at 228,445 to 229,589 8464 mRNA_97: 8465 - KOG2234 Predicted UDP-galactose transporter, at 229,785 to 233,167 8465

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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228,247 + +1.0
228,382 - +1.6
228,399 - -0.4
228,413 - +0.7
229,618 - +0.6
229,618 + +0.4
229,681 - -0.2
229,688 + -0.6
230,132 + 8465 mRNA_97 0.10 -1.1
230,155 - 8465 mRNA_97 0.11 +0.7
230,173 + 8465 mRNA_97 0.11 +0.1
230,329 + 8465 mRNA_97 0.16 -0.1
230,399 - 8465 mRNA_97 0.18 -0.3
230,575 - 8465 mRNA_97 0.23 +0.7

Or see this region's nucleotide sequence