Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_127

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8495 and 8496 are separated by 388 nucleotides mRNA_127: 8495 - K11229 BCK1 mitogen-activated protein kinase kinase kinase, at 304,252 to 307,207 8495 mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307,596 to 312,359 8496

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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303,311 - -1.6
303,311 - -2.0
303,325 + -1.4
303,439 - +1.7
303,444 + -0.8
303,570 - +0.9
303,840 - +1.2
304,007 - -0.1
304,333 + -1.0
304,439 - +0.5
304,603 + 8495 mRNA_127 0.12 +0.7
304,933 - 8495 mRNA_127 0.23 -0.1
305,053 - 8495 mRNA_127 0.27 -0.3
305,064 + 8495 mRNA_127 0.27 -0.9
305,450 - 8495 mRNA_127 0.41 -0.5
305,468 - 8495 mRNA_127 0.41 +0.5
305,566 - 8495 mRNA_127 0.44 -0.6
305,852 + 8495 mRNA_127 0.54 +0.2
306,191 - 8495 mRNA_127 0.66 +0.4
306,337 + 8495 mRNA_127 0.71 +1.0
306,834 - 8495 mRNA_127 0.87 +0.1
306,877 - 8495 mRNA_127 0.89 +1.0
306,913 + -0.0
307,185 - +0.4
307,205 - +0.7
307,285 + +0.3
307,305 - +1.2
307,482 + +0.3
307,487 + +0.5
307,515 + -0.1
307,600 - +0.0
307,629 + -0.9
307,634 + -1.7
307,719 + -1.1
307,785 - -1.8
307,886 - -1.5
308,051 + +0.2
308,064 - +0.5
308,146 + 8496 mRNA_128 0.12 +3.9

Or see this region's nucleotide sequence