Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_169

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8536 and 8537 are separated by 96 nucleotides8537 and 8538 are separated by 243 nucleotides mRNA_168: 8536 - K01598 PPCDC, coaC phosphopantothenoylcysteine decarboxylase, at 413,984 to 414,971 8536 mRNA_169: 8537 - K14306 NUP62, NSP1 nuclear pore complex protein Nup62, at 415,068 to 417,360 8537 mRNA_170: 8538 - K12179 COPS6, CSN6 COP9 signalosome complex subunit 6, at 417,604 to 419,070 8538

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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415,048 - +0.9
415,051 - -0.6
415,056 - +2.0
417,757 + 8538 mRNA_170 0.10 +0.2
417,782 - 8538 mRNA_170 0.12 -0.7
417,928 - 8538 mRNA_170 0.22 -1.1
418,086 + 8538 mRNA_170 0.33 +2.3

Or see this region's nucleotide sequence