Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_182

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8549 and 8550 are separated by 99 nucleotides8550 and 8551 are separated by 207 nucleotides mRNA_181: 8549 - K12870 ISY1 pre-mRNA-splicing factor ISY1, at 441,723 to 442,875 8549 mRNA_182: 8550 - K19828 MTG1 mitochondrial GTPase 1, at 442,975 to 444,845 8550 mRNA_183: 8551 - KOG4463 Uncharacterized conserved protein, at 445,053 to 446,538 8551

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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443,054 - -0.2
443,148 + +2.5
443,505 + 8550 mRNA_182 0.28 +1.0
444,963 - -1.7
444,970 - -1.2
444,986 - -1.5
445,107 + -0.6
445,272 - 8551 mRNA_183 0.15 +0.9
445,273 + 8551 mRNA_183 0.15 -1.7
445,280 + 8551 mRNA_183 0.15 -1.2
445,410 - 8551 mRNA_183 0.24 -1.5
445,419 + 8551 mRNA_183 0.25 -0.5

Or see this region's nucleotide sequence