Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_208

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8575 and 8576 are separated by 405 nucleotides8576 and 8577 are separated by 79 nucleotides mRNA_207: 8575 - K01892 HARS, hisS histidyl-tRNA synthetase, at 506,523 to 508,733 8575 mRNA_208: 8576 - K19270 yfbT, yniC sugar-phosphatase, at 509,139 to 510,075 8576 mRNA_209: 8577 - K12571 PAN2 PAB-dependent poly(A)-specific ribonuclease subunit 2, at 510,155 to 514,679 8577

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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508,504 - 8575 mRNA_207 0.90 +1.0
509,080 + +0.6
509,088 + +0.1
509,405 - 8576 mRNA_208 0.28 -0.1
509,546 - 8576 mRNA_208 0.43 +0.5
510,127 + +2.0
510,420 + +0.4
510,716 - 8577 mRNA_209 0.12 +0.3
510,737 - 8577 mRNA_209 0.13 +1.4

Or see this region's nucleotide sequence