Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_210

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8577 and 8578 are separated by 436 nucleotides8578 and 8579 are separated by 357 nucleotides mRNA_209: 8577 - K12571 PAN2 PAB-dependent poly(A)-specific ribonuclease subunit 2, at 510,155 to 514,679 8577 mRNA_210: 8578 - K08675 PRSS15, PIM1 Lon-like ATP-dependent protease, at 515,116 to 519,191 8578 mRNA_211: 8579 - K00432 gpx glutathione peroxidase, at 519,549 to 520,466 8579

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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514,414 - +1.6
514,418 - +0.4
514,444 + +0.6
514,571 + +0.8
514,576 - +0.3
514,576 - +2.5
514,577 + +0.8
514,577 - +1.4
514,697 + +0.9
514,852 - +2.5
514,872 - -1.0
514,878 - +0.3
514,907 - +1.4
514,987 - -0.2
515,024 - +0.6
515,030 - +0.1
515,040 - +1.3
515,041 + +0.7
515,054 - +1.6
515,063 + -1.2
515,087 + +0.2
519,554 + -0.9

Or see this region's nucleotide sequence