Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_245

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8612 and 8613 are separated by 323 nucleotides8613 and 8614 are separated by 69 nucleotides mRNA_244: 8612 - K17778 TIM10 mitochondrial import inner membrane translocase subunit TIM10, at 596,277 to 596,788 8612 mRNA_245: 8613 - KOG0256 1-aminocyclopropane-1-carboxylate synthase, and related proteins, at 597,112 to 598,781 8613 mRNA_246: 8614 - Hypothetical Protein, at 598,851 to 601,414 8614

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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596,209 - +0.2
597,385 - 8613 mRNA_245 0.16 -1.4
597,542 + 8613 mRNA_245 0.26 -1.0
597,694 + 8613 mRNA_245 0.35 -1.9
598,124 + 8613 mRNA_245 0.61 +0.2
598,145 + 8613 mRNA_245 0.62 +1.1
598,299 + 8613 mRNA_245 0.71 +0.1
598,386 - 8613 mRNA_245 0.76 -0.1
598,939 - +0.4
598,969 - -0.2
598,971 + -0.6
598,974 - +0.5
598,987 - -0.9
598,988 - +0.5
599,002 + +0.1
599,034 + +0.0
599,094 + -0.8
599,130 - 8614 mRNA_246 0.11 +1.0
599,148 + 8614 mRNA_246 0.12 +0.2
599,153 - 8614 mRNA_246 0.12 +0.7
599,153 - 8614 mRNA_246 0.12 +1.4
599,153 - 8614 mRNA_246 0.12 -0.2
599,154 + 8614 mRNA_246 0.12 -1.0
599,154 + 8614 mRNA_246 0.12 +2.1
599,166 + 8614 mRNA_246 0.12 -0.9
599,167 - 8614 mRNA_246 0.12 +0.1
599,167 - 8614 mRNA_246 0.12 -0.8
599,172 + 8614 mRNA_246 0.13 +3.1
599,173 + 8614 mRNA_246 0.13 -0.3
599,176 - 8614 mRNA_246 0.13 +0.5
599,177 + 8614 mRNA_246 0.13 -0.2
599,177 + 8614 mRNA_246 0.13 +1.5
599,178 - 8614 mRNA_246 0.13 -0.8
599,183 - 8614 mRNA_246 0.13 -0.2
599,185 - 8614 mRNA_246 0.13 -1.8
599,187 + 8614 mRNA_246 0.13 -0.5
599,187 - 8614 mRNA_246 0.13 +0.9
599,190 + 8614 mRNA_246 0.13 +0.1
599,195 - 8614 mRNA_246 0.13 +0.1
599,201 + 8614 mRNA_246 0.14 +0.8
599,201 + 8614 mRNA_246 0.14 -2.3
599,201 + 8614 mRNA_246 0.14 -1.9
599,201 + 8614 mRNA_246 0.14 -0.6
599,201 + 8614 mRNA_246 0.14 +1.5
599,201 - 8614 mRNA_246 0.14 -0.1
599,202 + 8614 mRNA_246 0.14 +0.5
599,207 - 8614 mRNA_246 0.14 -1.3
599,211 + 8614 mRNA_246 0.14 -0.8
599,213 + 8614 mRNA_246 0.14 -0.2
599,218 + 8614 mRNA_246 0.14 +1.2
599,223 + 8614 mRNA_246 0.15 -0.1
599,228 - 8614 mRNA_246 0.15 +3.9
599,254 + 8614 mRNA_246 0.16 -0.1
599,324 - 8614 mRNA_246 0.18 -0.1
599,330 + 8614 mRNA_246 0.19 -0.8
599,333 + 8614 mRNA_246 0.19 +0.6
599,551 + 8614 mRNA_246 0.27 -1.0
599,554 - 8614 mRNA_246 0.27 -2.3
599,617 - 8614 mRNA_246 0.30 -0.0
599,668 + 8614 mRNA_246 0.32 +0.2
599,731 + 8614 mRNA_246 0.34 +1.2
599,734 + 8614 mRNA_246 0.34 -1.7
599,744 + 8614 mRNA_246 0.35 +0.1
599,747 - 8614 mRNA_246 0.35 +0.6

Or see this region's nucleotide sequence