Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_258

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8625 and 8626 are separated by 720 nucleotides8626 and 8627 are separated by 535 nucleotides mRNA_257: 8625 - KOG1745 Histones H3 and H4, at 619,763 to 620,480 8625 mRNA_258: 8626 - HMMPfam-Eukaryotic protein of unknown function (DUF1764)-PF08576, at 621,201 to 621,954 8626 mRNA_259: 8627 - HMMPfam-Domain of unknown function (DUF1771)-PF08590,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,ProSiteProfiles-Smr domain profile.-PS50828,SMART-zinc finger-SM00356, at 622,490 to 625,658 8627

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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620,225 + 8625 mRNA_257 0.64 +0.4
620,645 - +0.7
620,675 - -1.4
620,957 + +0.5
621,104 + -0.3
621,987 - -1.4
622,007 - +1.7
622,143 - -0.2
622,144 - +1.3
622,150 - +0.7
622,153 + -2.4
622,313 - +1.6
622,316 + -0.8
622,423 + -0.4
622,445 + -0.2
622,455 + +0.4
622,715 - +2.3

Or see this region's nucleotide sequence