Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_318

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8685 and 8686 are separated by 81 nucleotides8686 and 8687 are separated by 85 nucleotides mRNA_317: 8685 - HMMPfam-DnaJ domain-PF00226,PRINTS-DnaJ domain signature-PR00625,ProSitePatterns-Nt-dnaJ domain signature.-PS00636,ProSiteProfiles-dnaJ domain profile.-PS50076,ProSiteProfiles-IQ motif profile.-PS50096,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565, at 756,228 to 757,512 8685 mRNA_318: 8686 - Interpro Fungal domain of unknown function (DUF1750), at 757,594 to 759,249 8686 mRNA_319: 8687 - KOG2134 Polynucleotide kinase 3' phosphatase, at 759,335 to 760,537 8687

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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756,641 - 8685 mRNA_317 0.32 -3.5
756,817 + 8685 mRNA_317 0.46 -0.2
756,974 - 8685 mRNA_317 0.58 -1.9
757,021 + 8685 mRNA_317 0.62 +0.3
757,165 - 8685 mRNA_317 0.73 +1.5
757,425 + +2.1
758,983 - 8686 mRNA_318 0.84 -0.4
759,007 - 8686 mRNA_318 0.85 -1.5
759,128 + +0.6
759,281 - -4.5
759,283 - -1.1
759,294 + +0.4
759,424 + +0.1
759,424 - -0.3
759,446 + -1.4
759,591 - 8687 mRNA_319 0.21 +2.6
759,593 - 8687 mRNA_319 0.21 +0.7
759,596 + 8687 mRNA_319 0.22 -0.7
759,880 - 8687 mRNA_319 0.45 +1.4
760,182 - 8687 mRNA_319 0.70 -1.4

Or see this region's nucleotide sequence