Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_335

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8702 and 8703 are separated by 92 nucleotides8703 and 8704 are separated by 463 nucleotides8704 and 8705 are separated by 297 nucleotides mRNA_334: 8702 - K00938 E2.7.4.2, mvaK2 phosphomevalonate kinase, at 792,166 to 794,119 8702 mRNA_335: 8703 - BLAST LOC100145131 protein [Xenopus tropicalis], at 794,212 to 794,991 8703 mRNA_336: 8704 - BLAST AGAP003941-PA [Anopheles gambiae str. PEST], at 795,455 to 795,670 8704 mRNA_337: 8705 - HMMPfam-Glycosyl hydrolases family 17-PF00332,SUPERFAMILY--SSF51445, at 795,968 to 797,601 8705

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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794,216 - -0.8
794,984 - +2.4
795,085 + -0.3
795,089 + +1.3
795,096 - +1.9
795,105 - -0.2
795,229 - +1.7
795,259 + -1.0
795,262 + -1.3
795,263 + +1.3
795,272 - +0.9
795,284 - +0.0
795,290 + +0.0
795,677 - +1.2
795,677 - -2.7
795,806 - +0.5
795,822 + +0.3

Or see this region's nucleotide sequence