Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_364

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8731 and 8732 are separated by 101 nucleotides8732 and 8733 are separated by 115 nucleotides mRNA_363: 8731 - K14776 DDX10, DBP4 ATP-dependent RNA helicase DDX10/DBP4, at 843,227 to 846,125 8731 mRNA_364: 8732 - KOG2498 IK cytokine down-regulator of HLA class II, at 846,227 to 847,901 8732 mRNA_365: 8733 - K17945 TPM1_2 tropomyosin, fungi type, at 848,017 to 848,980 8733

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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846,950 + 8732 mRNA_364 0.43 -0.5
847,264 + 8732 mRNA_364 0.62 +1.4
847,522 - 8732 mRNA_364 0.77 -0.6
847,682 - 8732 mRNA_364 0.87 -1.0
847,804 - -0.5
847,945 - -0.3
847,945 + -2.5
847,969 + +1.0

Or see this region's nucleotide sequence