Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_396

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8763 and 8764 are separated by 272 nucleotides8764 and 8765 are separated by 169 nucleotides mRNA_395: 8763 - KOG2262 Sexual differentiation process protein ISP4, at 918,678 to 921,418 8763 mRNA_396: 8764 - K07478 ycaJ putative ATPase, at 921,691 to 924,142 8764 mRNA_397: 8765 - SUPERFAMILY--SSF52047, at 924,312 to 925,720 8765

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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921,273 - +0.7
921,349 + -1.0
921,462 + -0.2
921,462 + +0.8
921,758 - -1.2
921,779 + +1.5
921,915 + +1.4
921,944 + 8764 mRNA_396 0.10 +0.6
922,038 - 8764 mRNA_396 0.14 +0.2
922,047 - 8764 mRNA_396 0.15 +0.4
922,357 - 8764 mRNA_396 0.27 -0.1
922,942 - 8764 mRNA_396 0.51 +0.9
923,092 - 8764 mRNA_396 0.57 +0.6
923,518 - 8764 mRNA_396 0.75 +0.9
923,546 - 8764 mRNA_396 0.76 -0.6
923,553 - 8764 mRNA_396 0.76 +0.4
924,076 - +1.5
924,126 - -0.2
924,389 - +0.5
924,518 - 8765 mRNA_397 0.15 -0.8
924,536 - 8765 mRNA_397 0.16 -0.5
924,542 + 8765 mRNA_397 0.16 +0.7
924,560 + 8765 mRNA_397 0.18 +0.2
924,650 + 8765 mRNA_397 0.24 -1.4
924,783 - 8765 mRNA_397 0.33 +3.4
924,994 + 8765 mRNA_397 0.48 +0.1

Or see this region's nucleotide sequence