Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_407

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8774 and 8775 are separated by 98 nucleotides mRNA_406: 8774 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 944,223 to 945,484 8774 mRNA_407: 8775 - Hypothetical Protein, at 945,583 to 946,571 8775

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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945,005 - 8774 mRNA_406 0.62 -0.8
946,018 - 8775 mRNA_407 0.44 +1.4
946,219 - 8775 mRNA_407 0.64 +1.9
946,360 + 8775 mRNA_407 0.79 -0.8
946,509 + +0.1
946,512 - -0.1
946,689 - -1.6
947,390 - -2.5
947,410 + -0.2

Or see this region's nucleotide sequence