Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_422

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8789 and 8790 are separated by 415 nucleotides8790 and 8791 are separated by 199 nucleotides mRNA_421: 8789 - K11209 yghU, yfcG GSH-dependent disulfide-bond oxidoreductase, at 983,035 to 984,157 8789 mRNA_422: 8790 - KOG0911 Glutaredoxin-related protein, at 984,573 to 985,710 8790 mRNA_423: 8791 - KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion, at 985,910 to 986,810 8791

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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983,645 + 8789 mRNA_421 0.54 -0.3
983,796 - 8789 mRNA_421 0.68 -0.6
983,924 - 8789 mRNA_421 0.79 -1.3
984,063 - +0.7
984,096 + -0.2
984,206 - +1.4
984,485 - +1.2
984,515 + -1.5
984,647 + -1.4
985,680 + -0.0
985,804 + +0.1
986,081 + 8791 mRNA_423 0.19 -0.2
986,551 - 8791 mRNA_423 0.71 +0.7
986,663 - 8791 mRNA_423 0.84 -0.7
986,698 - 8791 mRNA_423 0.87 +3.6

Or see this region's nucleotide sequence