Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_516

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8883 and 8884 are separated by 216 nucleotides8884 and 8885 are separated by 269 nucleotides mRNA_515: 8883 - Hypothetical Protein, at 1,225,515 to 1,227,526 8883 mRNA_516: 8884 - K04482 RAD51 DNA repair protein RAD51, at 1,227,743 to 1,229,231 8884 mRNA_517: 8885 - K07508 ACAA2 acetyl-CoA acyltransferase 2, at 1,229,501 to 1,231,364 8885

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,228,996 + 8884 mRNA_516 0.84 +0.9
1,229,885 + 8885 mRNA_517 0.21 -1.1
1,230,070 - 8885 mRNA_517 0.31 -0.9

Or see this region's nucleotide sequence