Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_526

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8893 and 8894 are separated by 312 nucleotides mRNA_525: 8893 - K01265 map methionyl aminopeptidase, at 1,253,926 to 1,255,834 8893 mRNA_526: 8894 - K02915 RP-L34e, RPL34 large subunit ribosomal protein L34e, at 1,256,147 to 1,256,994 8894

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,255,262 - 8893 mRNA_525 0.70 -2.0
1,255,375 - 8893 mRNA_525 0.76 -0.3
1,255,406 + 8893 mRNA_525 0.78 -0.9
1,255,541 + 8893 mRNA_525 0.85 -1.4
1,255,692 - +0.8
1,255,701 + +1.0
1,255,702 + -0.3
1,255,824 - -0.2
1,256,006 - +1.6
1,256,014 + -0.5
1,256,015 + +0.3
1,256,030 - +1.4
1,256,408 + 8894 mRNA_526 0.31 -2.8
1,257,374 + -0.3
1,257,503 + -0.4
1,257,506 - -0.0
1,257,521 - -1.2
1,257,529 - -0.6
1,257,646 - -0.3
1,257,651 - -1.4
1,257,653 - +0.5
1,257,654 - +0.1
1,257,677 - +0.3
1,257,685 + +1.0
1,257,809 - -1.0
1,257,841 - +0.4
1,257,848 + +0.4
1,257,968 - -1.3

Or see this region's nucleotide sequence