Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_567

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8933 and 8934 are separated by 117 nucleotides8934 and 8935 are separated by 270 nucleotides8935 and 8936 are separated by 229 nucleotides mRNA_565: 8933 - K03256 TRM6, GCD10 tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit, at 1,353,645 to 1,355,726 8933 mRNA_566: 8934 - HMMPfam-Oligosaccaryltransferase-PF10215,SUPERFAMILY--SSF103464, at 1,355,844 to 1,356,185 8934 mRNA_567: 8935 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 1,356,456 to 1,359,397 8935 mRNA_568: 8936 - K14454 GOT1 aspartate aminotransferase, cytoplasmic, at 1,359,627 to 1,361,515 8936

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,355,919 + 8934 mRNA_566 0.22 +0.5
1,355,925 + 8934 mRNA_566 0.24 -0.4
1,356,185 + -0.7
1,356,200 + +0.2
1,356,306 + -0.8
1,356,308 - +0.1
1,356,313 - -1.6
1,356,325 - +1.1
1,356,325 - -0.9
1,356,331 + +1.9
1,356,332 + -0.2
1,356,634 - -0.4
1,356,659 - -0.5
1,356,783 + 8935 mRNA_567 0.11 +0.6
1,356,807 + 8935 mRNA_567 0.12 -0.2
1,357,301 - 8935 mRNA_567 0.29 +1.6
1,357,310 - 8935 mRNA_567 0.29 +0.1
1,357,685 - 8935 mRNA_567 0.42 +1.4
1,357,699 - 8935 mRNA_567 0.42 -1.9
1,357,824 - 8935 mRNA_567 0.46 +1.6
1,357,983 + 8935 mRNA_567 0.52 +0.6
1,358,024 + 8935 mRNA_567 0.53 -0.2
1,358,025 - 8935 mRNA_567 0.53 +0.7
1,358,248 - 8935 mRNA_567 0.61 +2.0
1,358,270 - 8935 mRNA_567 0.62 +1.5
1,358,275 - 8935 mRNA_567 0.62 -0.1
1,358,283 - 8935 mRNA_567 0.62 +2.0
1,358,291 + 8935 mRNA_567 0.62 -2.3
1,358,294 + 8935 mRNA_567 0.62 -0.3
1,358,295 - 8935 mRNA_567 0.63 +0.3
1,358,307 + 8935 mRNA_567 0.63 -1.0
1,358,313 - 8935 mRNA_567 0.63 -0.3
1,358,329 + 8935 mRNA_567 0.64 -0.3
1,358,421 - 8935 mRNA_567 0.67 +0.5
1,358,428 + 8935 mRNA_567 0.67 +0.7
1,358,546 - 8935 mRNA_567 0.71 -0.6
1,358,572 + 8935 mRNA_567 0.72 -0.3
1,358,609 - 8935 mRNA_567 0.73 -0.3
1,358,611 - 8935 mRNA_567 0.73 -0.3
1,358,612 - 8935 mRNA_567 0.73 -0.6
1,358,626 + 8935 mRNA_567 0.74 -2.6
1,358,712 + 8935 mRNA_567 0.77 -1.5
1,358,740 - 8935 mRNA_567 0.78 +1.1
1,358,740 + 8935 mRNA_567 0.78 +0.4
1,359,289 + -2.0
1,359,489 + +0.3
1,359,685 + +1.0
1,360,066 + 8936 mRNA_568 0.23 +1.9
1,360,369 - 8936 mRNA_568 0.39 -0.7

Or see this region's nucleotide sequence