Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_612

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8979 and 8980 are separated by 109 nucleotides8980 and 8981 are separated by 147 nucleotides mRNA_611: 8979 - K00490 CYP4F cytochrome P450, family 4, subfamily F, at 1,470,707 to 1,472,980 8979 mRNA_612: 8980 - KOG3183 Predicted Zn-finger protein, at 1,473,090 to 1,474,198 8980 mRNA_613: 8981 - K10631 TOPORS E3 ubiquitin-protein ligase Topors, at 1,474,346 to 1,477,518 8981

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,472,640 + 8979 mRNA_611 0.85 +0.2
1,472,659 - 8979 mRNA_611 0.86 -0.9
1,472,799 - -2.5
1,472,955 - -0.7
1,473,006 + +0.3
1,473,067 - -2.0
1,473,070 + -1.6
1,473,106 - -0.1
1,473,132 + -1.1
1,473,232 - 8980 mRNA_612 0.13 -0.6
1,473,248 - 8980 mRNA_612 0.14 -0.2
1,473,264 + 8980 mRNA_612 0.16 -1.2
1,473,265 + 8980 mRNA_612 0.16 -0.7
1,473,265 + 8980 mRNA_612 0.16 -0.9
1,473,394 - 8980 mRNA_612 0.27 +0.4
1,473,396 + 8980 mRNA_612 0.28 -1.2
1,473,425 - 8980 mRNA_612 0.30 -0.6
1,473,892 - 8980 mRNA_612 0.72 +0.6
1,474,142 + +0.4
1,474,158 + +1.0
1,474,161 - +0.8
1,474,303 - +1.3
1,474,708 + 8981 mRNA_613 0.11 -1.3
1,475,041 - 8981 mRNA_613 0.22 -0.9

Or see this region's nucleotide sequence