Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_695

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9062 and 9063 are separated by 50 nucleotides9063 and 9064 are separated by 476 nucleotides mRNA_694: 9062 - Hypothetical Protein, at 1,659,666 to 1,660,992 9062 mRNA_695: 9063 - Hypothetical Protein, at 1,661,043 to 1,663,023 9063 mRNA_696: 9064 - K03754 EIF2B2 translation initiation factor eIF-2B subunit beta, at 1,663,500 to 1,665,283 9064

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,660,462 - 9062 mRNA_694 0.60 +0.0
1,660,468 + 9062 mRNA_694 0.60 +1.0
1,660,468 + 9062 mRNA_694 0.60 -0.2
1,660,468 + 9062 mRNA_694 0.60 -1.8
1,660,471 + 9062 mRNA_694 0.61 +2.0
1,660,471 - 9062 mRNA_694 0.61 -1.8
1,660,477 + 9062 mRNA_694 0.61 -0.6
1,660,477 + 9062 mRNA_694 0.61 +1.6
1,660,646 - 9062 mRNA_694 0.74 -0.5
1,661,061 - +0.9
1,661,359 + 9063 mRNA_695 0.16 +0.4
1,661,574 + 9063 mRNA_695 0.27 +0.5
1,661,814 - 9063 mRNA_695 0.39 +0.0
1,661,898 + 9063 mRNA_695 0.43 -0.6
1,662,449 + 9063 mRNA_695 0.71 -0.3
1,662,512 + 9063 mRNA_695 0.74 -0.4
1,662,680 + 9063 mRNA_695 0.83 +0.6
1,663,107 + +4.6
1,663,271 + +0.4
1,663,272 - +1.2
1,663,399 + +0.4
1,663,409 - +0.1
1,663,420 - -1.3
1,663,422 + +1.0
1,663,425 - +2.1

Or see this region's nucleotide sequence