Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_702

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9069 and 9070 are separated by 500 nucleotides mRNA_701: 9069 - K08776 NPEPPS puromycin-sensitive aminopeptidase, at 1,674,327 to 1,678,341 9069 mRNA_702: 9070 - BLAST RAN guanine nucleotide release factor [Moesziomyces a..., at 1,678,842 to 1,679,928 9070

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,677,904 - 9069 mRNA_701 0.89 -1.0
1,677,966 + -0.6
1,678,209 + -0.0
1,678,449 - -0.9
1,678,521 - +0.9
1,678,524 + -0.1
1,678,539 + -1.2
1,678,593 - +0.5
1,678,637 - -0.3
1,678,646 + +2.5
1,678,662 - +0.4
1,678,665 + -0.2
1,678,684 + +1.4
1,678,692 - +2.7
1,678,697 - +0.1
1,678,697 + -2.5
1,678,704 - +0.4
1,678,715 - +1.3
1,678,720 + -1.0
1,678,729 + +0.1
1,678,732 - -1.0
1,678,738 + -0.4
1,678,860 - +0.9
1,679,003 - 9070 mRNA_702 0.15 +0.6
1,679,888 - -1.9
1,679,888 + -0.7
1,680,120 - -0.2
1,680,130 + +0.9
1,680,420 - -0.3
1,680,735 + +0.3
1,680,741 + -0.8
1,680,743 - -0.6
1,680,827 - +1.5
1,680,865 + -2.8
1,680,884 - -0.3
1,680,886 + +2.1

Or see this region's nucleotide sequence