Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_703

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9071 and 9072 are separated by 489 nucleotides mRNA_703: 9071 - K20223 IPO7, RANBP7 importin-7, at 1,681,177 to 1,685,261 9071 mRNA_704: 9072 - Hypothetical Protein, at 1,685,751 to 1,686,578 9072

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,680,420 - -0.3
1,680,735 + +0.3
1,680,741 + -0.8
1,680,743 - -0.6
1,680,827 - +1.5
1,680,865 + -2.8
1,680,884 - -0.3
1,680,886 + +2.1
1,681,023 + +0.6
1,681,028 - -0.6
1,681,060 + +0.2
1,681,067 - -0.4
1,681,080 + -0.7
1,681,187 - -0.5
1,681,352 + +2.2
1,681,466 + +0.5
1,681,839 + 9071 mRNA_703 0.16 +0.0
1,682,045 + 9071 mRNA_703 0.21 -0.3
1,682,197 + 9071 mRNA_703 0.25 +0.9
1,682,481 - 9071 mRNA_703 0.32 +1.5
1,682,634 + 9071 mRNA_703 0.36 +0.0
1,682,763 + 9071 mRNA_703 0.39 -0.8
1,682,919 + 9071 mRNA_703 0.43 +2.3
1,683,072 - 9071 mRNA_703 0.46 +0.5
1,683,516 - 9071 mRNA_703 0.57 -1.3
1,683,553 - 9071 mRNA_703 0.58 -1.6
1,683,874 + 9071 mRNA_703 0.66 -0.3
1,684,559 - 9071 mRNA_703 0.83 -0.6
1,685,145 + -0.9
1,685,152 + +0.9
1,685,280 + -0.0
1,685,285 - -0.1
1,685,285 - -1.5
1,685,288 - -0.1
1,685,289 + +0.0
1,685,294 - -0.8
1,685,296 - +0.3
1,685,303 + +1.1
1,685,307 + +0.5
1,685,313 + -0.5
1,685,453 + -0.9
1,685,478 + -0.0
1,685,480 - -0.2
1,685,488 - +1.4
1,685,586 - -0.7
1,685,612 + -1.0
1,685,615 - +0.1
1,685,716 - +1.0
1,685,766 - +1.9
1,685,767 + -0.6
1,685,811 + -0.2
1,685,900 - 9072 mRNA_704 0.18 -0.1
1,685,915 + 9072 mRNA_704 0.20 +0.5
1,686,066 + 9072 mRNA_704 0.38 +0.6
1,686,177 - 9072 mRNA_704 0.51 +1.2
1,686,182 + 9072 mRNA_704 0.52 +0.4

Or see this region's nucleotide sequence