Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_732

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9099 and 9100 are separated by 382 nucleotides9100 and 9101 are separated by 42 nucleotides mRNA_731: 9099 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,743,450 to 1,746,549 9099 mRNA_732: 9100 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 1,746,932 to 1,748,724 9100 mRNA_733: 9101 - K13954 yiaY alcohol dehydrogenase, at 1,748,767 to 1,750,473 9101

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,746,009 + 9099 mRNA_731 0.83 +0.3
1,746,291 + -0.9
1,746,301 - -0.7
1,746,311 - +1.3
1,746,396 - -0.0
1,746,397 + -2.2
1,746,431 - +1.1
1,746,439 + +0.9
1,746,464 - -1.2
1,746,573 - +0.6
1,746,582 - +0.7
1,746,600 - -0.6
1,746,601 - -1.3
1,746,605 - -0.3
1,746,610 + +0.7
1,746,737 + -0.8
1,746,748 - -1.2
1,746,756 + +0.5
1,746,874 - +1.4
1,746,876 - -0.5
1,746,940 + +0.0
1,746,945 - +0.6
1,746,992 - -0.4
1,747,005 + -0.2
1,747,051 + +0.0
1,747,421 + 9100 mRNA_732 0.27 -1.1
1,747,645 - 9100 mRNA_732 0.40 -0.7
1,747,765 - 9100 mRNA_732 0.46 +0.4
1,748,049 - 9100 mRNA_732 0.62 +0.8
1,748,114 - 9100 mRNA_732 0.66 +0.3
1,748,120 - 9100 mRNA_732 0.66 +1.5
1,748,126 + 9100 mRNA_732 0.67 +1.7
1,748,328 + 9100 mRNA_732 0.78 -0.2
1,748,383 - 9100 mRNA_732 0.81 -1.7
1,748,385 - 9100 mRNA_732 0.81 +0.4
1,748,407 + 9100 mRNA_732 0.82 +1.3
1,748,481 - 9100 mRNA_732 0.86 +0.1
1,748,494 + 9100 mRNA_732 0.87 -0.0
1,748,520 - 9100 mRNA_732 0.89 -0.3
1,748,657 + +0.3
1,748,664 - -0.4
1,748,697 + +0.0
1,748,718 - +3.1
1,748,816 - +0.2
1,748,843 + -0.8
1,748,846 - +2.6
1,748,945 + 9101 mRNA_733 0.10 -0.4
1,749,173 - 9101 mRNA_733 0.24 -1.1
1,749,245 + 9101 mRNA_733 0.28 -1.2
1,749,264 - 9101 mRNA_733 0.29 +0.2
1,749,276 - 9101 mRNA_733 0.30 -0.0
1,749,314 - 9101 mRNA_733 0.32 -0.4
1,749,377 + 9101 mRNA_733 0.36 +0.8
1,749,389 + 9101 mRNA_733 0.36 +0.6
1,749,554 + 9101 mRNA_733 0.46 -0.6
1,749,554 + 9101 mRNA_733 0.46 +0.4
1,749,624 + 9101 mRNA_733 0.50 -0.4
1,749,678 - 9101 mRNA_733 0.53 +2.1
1,749,702 - 9101 mRNA_733 0.55 -1.2

Or see this region's nucleotide sequence