Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_734

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9101 and 9102 are separated by 395 nucleotides9102 and 9103 are separated by 755 nucleotides mRNA_733: 9101 - K13954 yiaY alcohol dehydrogenase, at 1,748,767 to 1,750,473 9101 mRNA_734: 9102 - K08149 SLC2A12, GLUT12 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 12, at 1,750,869 to 1,753,209 9102 mRNA_735: 9103 - KOG0175 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2, at 1,753,965 to 1,755,090 9103

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,750,110 + 9101 mRNA_733 0.79 -1.4
1,750,153 + 9101 mRNA_733 0.81 +2.6
1,750,175 - 9101 mRNA_733 0.82 +1.1
1,750,562 - +0.2
1,751,371 + 9102 mRNA_734 0.21 -1.1
1,752,140 - 9102 mRNA_734 0.54 +1.1
1,752,158 + 9102 mRNA_734 0.55 +1.3
1,752,198 + 9102 mRNA_734 0.57 +1.8
1,752,343 + 9102 mRNA_734 0.63 -1.4
1,752,471 + 9102 mRNA_734 0.68 -0.3
1,752,519 - 9102 mRNA_734 0.70 -1.3
1,752,527 + 9102 mRNA_734 0.71 -1.1
1,752,665 + 9102 mRNA_734 0.77 -0.6
1,752,727 + 9102 mRNA_734 0.79 +0.4
1,752,777 + 9102 mRNA_734 0.82 +0.5
1,752,987 - +0.0
1,753,267 - +0.0
1,753,288 + -0.1
1,753,292 + -0.1
1,753,300 + -0.5
1,753,360 - -0.4
1,753,406 - -2.2
1,753,532 - +0.4
1,753,689 - +1.0
1,753,793 - -1.5
1,753,834 + -1.4
1,753,844 - +2.9

Or see this region's nucleotide sequence