Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_816

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9183 and 9184 are separated by 735 nucleotides9184 and 9185 are separated by 364 nucleotides mRNA_815: 9183 - K04555 UBE2G2, UBC7 ubiquitin-conjugating enzyme E2 G2, at 1,941,867 to 1,942,865 9183 mRNA_816: 9184 - KOG0783 Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains, at 1,943,601 to 1,948,343 9184 mRNA_817: 9185 - K02208 CDK8_11 cyclin-dependent kinase 8/11, at 1,948,708 to 1,950,488 9185

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,943,087 + -0.1
1,943,089 + +0.5
1,943,394 - +0.1
1,943,397 + +0.9
1,943,530 - -0.0
1,943,540 - -1.1
1,943,687 - -0.9
1,943,812 - -0.2
1,943,813 - -0.7
1,943,826 - -1.4
1,943,835 + -0.4
1,943,846 + +1.6
1,943,956 + -0.8
1,944,413 - 9184 mRNA_816 0.17 +1.4
1,944,439 + 9184 mRNA_816 0.18 +0.3
1,944,524 + 9184 mRNA_816 0.19 +0.4
1,944,561 - 9184 mRNA_816 0.20 +0.2
1,944,842 - 9184 mRNA_816 0.26 +0.8
1,945,147 + 9184 mRNA_816 0.33 -2.2
1,945,281 - 9184 mRNA_816 0.35 -0.4
1,945,373 - 9184 mRNA_816 0.37 +0.3
1,945,730 - 9184 mRNA_816 0.45 -0.2
1,945,884 + 9184 mRNA_816 0.48 -2.2
1,946,056 + 9184 mRNA_816 0.52 -0.3
1,946,207 - 9184 mRNA_816 0.55 -3.3
1,946,270 + 9184 mRNA_816 0.56 -2.0
1,946,431 + 9184 mRNA_816 0.60 -0.9
1,946,756 - 9184 mRNA_816 0.67 -0.3
1,946,837 - 9184 mRNA_816 0.68 +1.4
1,946,890 + 9184 mRNA_816 0.69 -0.7
1,947,058 + 9184 mRNA_816 0.73 -0.2
1,947,193 - 9184 mRNA_816 0.76 +1.0
1,947,355 + 9184 mRNA_816 0.79 +0.5
1,947,373 - 9184 mRNA_816 0.80 -0.2
1,947,651 - 9184 mRNA_816 0.85 +1.0
1,947,803 + 9184 mRNA_816 0.89 -0.2
1,948,188 - +0.6
1,948,288 - +1.9
1,948,292 - +0.3
1,948,550 - +1.7
1,948,565 - -0.4
1,948,706 + +0.5
1,949,025 + 9185 mRNA_817 0.18 -0.1

Or see this region's nucleotide sequence