Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_838

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9205 and 9206 are separated by 598 nucleotides9206 and 9207 are separated by 272 nucleotides mRNA_837: 9205 - KOG2061 Uncharacterized MYND Zn-finger protein, at 2,005,552 to 2,007,276 9205 mRNA_838: 9206 - K06628 CDC45 cell division control protein 45, at 2,007,875 to 2,010,622 9206 mRNA_839: 9207 - BLAST protein of unknown function DUF1746, fungi [Rhodo..., at 2,010,895 to 2,011,512 9207

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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2,007,310 - -0.4
2,007,463 + -2.8
2,007,502 + -0.8
2,007,588 + +1.6
2,007,589 - -0.3
2,007,589 + -0.9
2,007,591 - +0.1
2,007,593 - +1.3
2,007,594 + +0.9
2,007,601 + -0.2
2,007,607 - +0.7
2,007,612 + +1.2
2,007,616 + +1.5
2,007,617 - -0.3
2,007,624 + +0.3
2,007,709 + +0.6
2,007,719 + -0.4
2,010,782 + +0.8
2,011,512 - -1.7
2,011,529 + -1.1
2,011,582 - +2.5

Or see this region's nucleotide sequence