Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_841

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9208 and 9209 are separated by 758 nucleotides9209 and 9210 are separated by 195 nucleotides mRNA_840: 9208 - BLAST protein of unknown function DUF1746, fungi [Rhodo..., at 2,012,054 to 2,014,320 9208 mRNA_841: 9209 - HMMPfam-Kinetochore protein CHL4 like-PF05238, at 2,015,079 to 2,016,824 9209 mRNA_842: 9210 - K02148 ATPeV1C, ATP6C V-type H+-transporting ATPase subunit C, at 2,017,020 to 2,018,936 9210

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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2,014,352 - +1.3
2,014,365 - +0.7
2,014,382 - -0.4
2,014,460 + +1.6
2,014,514 - +1.0
2,014,537 - +1.1
2,014,555 + -3.0
2,014,573 - +0.7
2,014,573 + -1.9
2,014,622 + +1.5
2,014,652 + -1.3
2,014,774 + -0.6
2,014,953 + +0.4
2,014,959 - +2.0
2,014,975 + -0.4
2,015,100 + +1.1
2,015,536 + 9209 mRNA_841 0.26 -3.4
2,015,545 - 9209 mRNA_841 0.27 +0.4
2,015,819 - 9209 mRNA_841 0.42 +0.8
2,015,822 + 9209 mRNA_841 0.43 -0.2
2,016,432 - 9209 mRNA_841 0.77 +0.3
2,016,562 - 9209 mRNA_841 0.85 -0.5
2,016,722 - +2.0
2,016,727 + -0.6
2,016,864 - -1.1
2,016,869 - +1.1

Or see this region's nucleotide sequence