Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_844

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9211 and 9212 are separated by 257 nucleotides9212 and 9213 are separated by 568 nucleotides mRNA_843: 9211 - KOG2262 Sexual differentiation process protein ISP4, at 2,019,044 to 2,022,236 9211 mRNA_844: 9212 - KOG1111 N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase, at 2,022,494 to 2,024,852 9212 mRNA_845: 9213 - KOG3346 Phosphatidylethanolamine binding protein, at 2,025,421 to 2,026,759 9213

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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2,021,740 - 9211 mRNA_843 0.84 -0.3
2,021,871 - 9211 mRNA_843 0.89 +0.4
2,021,946 - +1.1
2,022,265 + -0.1
2,022,845 + 9212 mRNA_844 0.15 -0.5
2,023,016 - 9212 mRNA_844 0.22 -0.1
2,023,020 + 9212 mRNA_844 0.22 -1.7
2,023,375 + 9212 mRNA_844 0.37 +0.9
2,023,614 + 9212 mRNA_844 0.47 -2.9
2,023,747 - 9212 mRNA_844 0.53 +1.4
2,023,858 + 9212 mRNA_844 0.58 +1.2
2,024,226 + 9212 mRNA_844 0.73 -0.7
2,024,475 - 9212 mRNA_844 0.84 +2.3
2,024,488 + 9212 mRNA_844 0.85 -1.1
2,024,951 + -0.4
2,024,969 + +0.4
2,025,087 - -0.7
2,025,125 - +0.9
2,025,285 + -1.2
2,025,401 - +1.7
2,025,404 - +0.2
2,025,412 + +0.2
2,025,594 - 9213 mRNA_845 0.13 +0.5
2,025,852 + 9213 mRNA_845 0.32 +0.7

Or see this region's nucleotide sequence