Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_881

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9248 and 9249 are separated by 123 nucleotides9249 and 9250 are separated by 77 nucleotides mRNA_880: 9248 - K10632 BRAP BRCA1-associated protein, at 2,101,842 to 2,104,437 9248 mRNA_881: 9249 - KOG4626 O-linked N-acetylglucosamine transferase OGT, at 2,104,561 to 2,105,712 9249 mRNA_882: 9250 - K07390 grxD, GLRX5 monothiol glutaredoxin, at 2,105,790 to 2,106,591 9250

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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2,103,661 - 9248 mRNA_880 0.70 -0.2
2,103,716 + 9248 mRNA_880 0.72 +0.5
2,103,836 + 9248 mRNA_880 0.77 -1.0
2,105,307 - 9249 mRNA_881 0.65 +0.0
2,105,453 + 9249 mRNA_881 0.77 -1.2
2,105,454 + 9249 mRNA_881 0.78 +2.5
2,105,573 - 9249 mRNA_881 0.88 -0.1
2,105,577 - 9249 mRNA_881 0.88 +0.7
2,105,594 + 9249 mRNA_881 0.90 +1.7
2,105,595 - 9249 mRNA_881 0.90 +0.0
2,105,602 + -1.2
2,105,605 - +1.3
2,105,717 + -1.8
2,105,717 - -0.7
2,105,727 - -1.1
2,105,731 - -2.0
2,106,560 + -1.0

Or see this region's nucleotide sequence