Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_903

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9270 and 9271 are separated by 285 nucleotides mRNA_902: 9270 - KOG2398 Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP), at 2,151,634 to 2,155,672 9270 mRNA_903: 9271 - Hypothetical Protein, at 2,155,958 to 2,156,725 9271

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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2,155,485 + -1.0
2,155,681 - +0.1
2,155,769 - +0.1
2,155,914 + -0.5
2,156,047 - 9271 mRNA_903 0.12 -1.4
2,156,089 + 9271 mRNA_903 0.17 -0.5
2,156,117 + 9271 mRNA_903 0.21 -1.0
2,156,356 - 9271 mRNA_903 0.52 -2.0
2,156,375 + 9271 mRNA_903 0.54 +2.2
2,156,678 - +0.9
2,156,802 - -0.1
2,156,921 - -1.1
2,156,924 + +0.1
2,156,941 + +0.9
2,156,957 - +0.5
2,157,098 - +0.1
2,157,210 + -0.2
2,157,231 + +0.9
2,157,273 + -0.1
2,157,311 + +0.4
2,157,357 - -0.1
2,157,379 - -0.7
2,157,391 - -0.5
2,157,392 + +0.0
2,157,397 - +1.7
2,157,400 - -0.7
2,157,423 + +0.4
2,157,450 - +0.0
2,157,523 + -0.2
2,157,542 + +2.1
2,157,553 + +1.6
2,157,590 - -1.4
2,157,681 - +1.5

Or see this region's nucleotide sequence