Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_983

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9350 and 9351 are separated by 456 nucleotides9351 and 9352 are separated by 575 nucleotides mRNA_982: 9350 - Hypothetical Protein, at 129,189 to 130,203 9350 mRNA_983: 9351 - K02974 RP-S24e, RPS24 small subunit ribosomal protein S24e, at 130,660 to 132,036 9351 mRNA_984: 9352 - Hypothetical Protein, at 132,612 to 133,421 9352

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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129,867 + 9350 mRNA_982 0.67 +2.4
130,264 - +0.9
130,428 - +1.7
130,446 + -1.0
130,451 + -1.0
130,451 + -0.8
130,588 + +0.5
130,591 + -1.3
132,303 - +0.4
132,667 - -0.5
132,811 - 9352 mRNA_984 0.25 -1.3
132,815 - 9352 mRNA_984 0.25 -0.0
132,818 + 9352 mRNA_984 0.25 -0.6
132,819 - 9352 mRNA_984 0.26 +1.8
132,916 + 9352 mRNA_984 0.38 -1.4
132,945 - 9352 mRNA_984 0.41 -0.1
132,956 + 9352 mRNA_984 0.42 -0.1

Or see this region's nucleotide sequence