Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1030

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9397 and 9398 are separated by 411 nucleotides mRNA_1029: 9397 - SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083, at 240,232 to 241,544 9397 mRNA_1030: 9398 - Hypothetical Protein, at 241,956 to 242,588 9398

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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241,178 + 9397 mRNA_1029 0.72 +0.7
241,601 - +2.2
241,609 + -0.4
241,740 - -0.3
241,929 + -0.5
242,031 - 9398 mRNA_1030 0.12 +1.0
242,077 - 9398 mRNA_1030 0.19 -1.5
242,080 - 9398 mRNA_1030 0.20 -1.6
242,162 - 9398 mRNA_1030 0.33 +0.4
242,348 - 9398 mRNA_1030 0.62 -0.3
242,355 - 9398 mRNA_1030 0.63 +0.2
242,903 - +0.9
242,932 + +0.8
243,494 - +0.1

Or see this region's nucleotide sequence