Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1048

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9415 and 9416 are separated by 184 nucleotides9416 and 9417 are separated by 76 nucleotides mRNA_1047: 9415 - K19054 FXN frataxin, at 272,188 to 272,699 9415 mRNA_1048: 9416 - KOG1812 Predicted E3 ubiquitin ligase, at 272,884 to 273,999 9416 mRNA_1049: 9417 - K12878 THOC1 THO complex subunit 1, at 274,076 to 276,723 9417

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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273,098 - 9416 mRNA_1048 0.19 +0.8
273,139 + 9416 mRNA_1048 0.23 +0.0
273,140 + 9416 mRNA_1048 0.23 -1.8
273,260 + 9416 mRNA_1048 0.34 +0.6
273,263 - 9416 mRNA_1048 0.34 -1.9
273,528 + 9416 mRNA_1048 0.58 +1.1
273,534 + 9416 mRNA_1048 0.58 +1.2
273,809 + 9416 mRNA_1048 0.83 -0.7
273,833 - 9416 mRNA_1048 0.85 -0.4
274,158 + -1.5
274,396 + 9417 mRNA_1049 0.12 +0.0

Or see this region's nucleotide sequence