Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1108

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9475 and 9476 are separated by 272 nucleotides9476 and 9477 are separated by 205 nucleotides mRNA_1107: 9475 - KOG0123 Polyadenylate-binding protein (RRM superfamily), at 421,636 to 422,494 9475 mRNA_1108: 9476 - KOG1134 Uncharacterized conserved protein, at 422,767 to 426,748 9476 mRNA_1109: 9477 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 426,954 to 427,895 9477

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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422,400 - 9475 mRNA_1107 0.89 -0.6
422,564 + +0.4
422,568 + +0.4
422,674 + +1.8
422,705 - +1.1
422,753 + -0.8
422,864 + -1.1
422,866 - +1.7
423,016 + -0.6
423,051 + -0.1
423,241 - 9476 mRNA_1108 0.12 -1.6
423,590 - 9476 mRNA_1108 0.21 -2.3
423,853 - 9476 mRNA_1108 0.27 -1.4
423,904 - 9476 mRNA_1108 0.29 +0.0
424,010 - 9476 mRNA_1108 0.31 -1.2
424,461 + 9476 mRNA_1108 0.43 +0.2
424,666 - 9476 mRNA_1108 0.48 -1.3
424,843 + 9476 mRNA_1108 0.52 -0.4
424,926 - 9476 mRNA_1108 0.54 +0.7
424,988 - 9476 mRNA_1108 0.56 -1.0
425,177 - 9476 mRNA_1108 0.61 -1.6
425,198 + 9476 mRNA_1108 0.61 -2.8
425,237 - 9476 mRNA_1108 0.62 -0.4
425,419 - 9476 mRNA_1108 0.67 +1.9
425,836 - 9476 mRNA_1108 0.77 +0.7
426,175 + 9476 mRNA_1108 0.86 +0.0
426,297 - 9476 mRNA_1108 0.89 +1.6
426,298 + 9476 mRNA_1108 0.89 -0.1
426,306 - 9476 mRNA_1108 0.89 -0.1
426,371 - -1.1
426,449 + -2.6
426,544 + +0.4
426,617 - +0.4
426,797 + -0.9
426,860 + -1.1
426,866 - -2.3
426,876 + +0.5
426,876 + +0.1
426,884 + +1.7
427,001 + +0.9
427,034 + +2.4
427,037 + +1.5
427,055 + 9477 mRNA_1109 0.11 -0.2
427,143 - 9477 mRNA_1109 0.20 -0.6
427,296 + 9477 mRNA_1109 0.36 -0.7
427,308 + 9477 mRNA_1109 0.38 -2.3
427,347 - 9477 mRNA_1109 0.42 +0.1
427,355 - 9477 mRNA_1109 0.43 -0.2
427,472 + 9477 mRNA_1109 0.55 -0.2
427,508 + 9477 mRNA_1109 0.59 -0.1
427,559 + 9477 mRNA_1109 0.64 +0.3
427,559 + 9477 mRNA_1109 0.64 -0.4
427,605 - 9477 mRNA_1109 0.69 +0.6

Or see this region's nucleotide sequence