Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1118

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9485 and 9486 are separated by 456 nucleotides9486 and 9487 are separated by 677 nucleotides mRNA_1117: 9485 - K13102 KIN DNA/RNA-binding protein KIN17, at 443,661 to 444,962 9485 mRNA_1118: 9486 - HMMPfam-RTA1 like protein-PF04479, at 445,419 to 446,946 9486 mRNA_1119: 9487 - Hypothetical Protein, at 447,624 to 448,229 9487

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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444,967 + +0.9
444,971 - +2.0
445,170 - -0.5
445,175 - -1.0
445,307 - +0.0
445,457 + -0.8
446,055 + 9486 mRNA_1118 0.42 -2.8
446,204 + 9486 mRNA_1118 0.51 -0.1
446,221 - 9486 mRNA_1118 0.52 +0.0
446,448 + 9486 mRNA_1118 0.67 -0.7
446,640 + 9486 mRNA_1118 0.80 +0.9
446,653 + 9486 mRNA_1118 0.81 +0.1
446,805 - -0.7
446,859 - -1.2
446,875 + +0.3
446,876 - -0.1
446,903 + -0.7
446,921 + +1.8
446,922 + +0.4
446,941 - +0.6
447,029 + +0.5
447,044 + +0.1
447,084 - -1.1
447,090 - +0.4
447,116 - +0.3
447,117 + +0.9
447,134 - +1.9
447,150 + +0.4
447,167 - -2.0
447,196 - +0.7
447,198 - -1.4
447,200 + -0.4
447,204 - -0.5
447,214 + -0.0
447,232 + -1.3
447,237 - +3.5
447,237 - -0.7
447,237 - +0.1
447,238 - -0.8
447,238 - +1.0
447,240 + +1.1
447,242 - -3.5
447,242 - -0.9
447,242 + +1.8
447,242 - +0.6
447,244 - -0.5
447,255 - +1.5
447,270 + +0.9
447,270 + -0.1
447,273 + +0.6
447,280 - -0.5
447,282 + -1.4
447,286 - +0.2
447,289 - +0.6
447,306 - +1.2
447,307 - -0.9
447,321 + -0.1
447,321 + +0.4
447,321 + -1.3
447,322 - -2.9
447,328 - +0.2
447,345 + +0.0
447,421 + +0.6
447,424 + -0.7
447,437 - -1.2
447,447 + -0.1
447,578 - +4.0
447,580 + +1.5
447,608 + +1.6
447,715 + 9487 mRNA_1119 0.15 -0.1
447,835 + 9487 mRNA_1119 0.35 +0.5
447,872 + 9487 mRNA_1119 0.41 -1.2
447,914 + 9487 mRNA_1119 0.48 -0.2

Or see this region's nucleotide sequence