Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1189

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9556 and 9557 are separated by 573 nucleotides9557 and 9558 are separated by 612 nucleotides mRNA_1188: 9556 - Hypothetical Protein, at 608,907 to 610,370 9556 mRNA_1189: 9557 - K02183 CALM calmodulin, at 610,944 to 612,445 9557 mRNA_1190: 9558 - K05747 WAS Wiskott-Aldrich syndrome protein, at 613,058 to 614,661 9558

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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610,417 + -0.1
610,435 + +2.2
610,452 - +1.0
612,471 - -0.0
612,483 + -0.9
612,499 + -1.2
612,503 + +2.3
612,508 - -0.3
612,515 + +3.0
612,618 + +2.1
612,636 - +0.8
612,641 + +0.5
612,790 + +1.5
612,929 - +1.5
612,938 - -2.0
612,973 - -0.2
613,111 - +3.1

Or see this region's nucleotide sequence