Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1260

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9627 and 9628 are separated by 201 nucleotides mRNA_1259: 9627 - K10887 DCLRE1C, ARTEMIS, SCIDA DNA cross-link repair 1C protein, at 771,743 to 774,831 9627 mRNA_1260: 9628 - Hypothetical Protein, at 775,033 to 777,519 9628

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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774,079 + 9627 mRNA_1259 0.76 -0.6
774,179 - 9627 mRNA_1259 0.79 +0.5
774,187 + 9627 mRNA_1259 0.79 +2.0
774,187 + 9627 mRNA_1259 0.79 +0.7
774,313 - 9627 mRNA_1259 0.83 -0.3
774,322 + 9627 mRNA_1259 0.83 +0.0
774,342 + 9627 mRNA_1259 0.84 +0.1
774,450 + 9627 mRNA_1259 0.88 +0.3
774,680 - +1.5
775,001 + +0.3
775,061 - +0.7
775,290 + 9628 mRNA_1260 0.10 +0.8
775,449 + 9628 mRNA_1260 0.17 +0.5
775,509 + 9628 mRNA_1260 0.19 -1.2
775,660 - 9628 mRNA_1260 0.25 -0.2
775,701 + 9628 mRNA_1260 0.27 +0.1
775,730 + 9628 mRNA_1260 0.28 +0.5
775,845 - 9628 mRNA_1260 0.33 +1.8
775,958 + 9628 mRNA_1260 0.37 +0.7
775,981 + 9628 mRNA_1260 0.38 +1.8
776,404 + 9628 mRNA_1260 0.55 +0.1
776,407 - 9628 mRNA_1260 0.55 +0.7
776,508 - 9628 mRNA_1260 0.59 +0.1
776,578 + 9628 mRNA_1260 0.62 +2.5
776,580 - 9628 mRNA_1260 0.62 +0.5
776,689 - 9628 mRNA_1260 0.67 -0.7
776,690 - 9628 mRNA_1260 0.67 +1.0
776,697 - 9628 mRNA_1260 0.67 +0.8
776,701 - 9628 mRNA_1260 0.67 +0.8
776,849 + 9628 mRNA_1260 0.73 +0.2
776,902 + 9628 mRNA_1260 0.75 +0.8
776,992 - 9628 mRNA_1260 0.79 +0.7
776,993 + 9628 mRNA_1260 0.79 +0.4
777,160 + 9628 mRNA_1260 0.86 +0.5
777,251 - 9628 mRNA_1260 0.89 +1.6
777,269 + 9628 mRNA_1260 0.90 +0.6
777,280 - -1.5
777,288 + +1.2
777,567 - -0.1
777,584 - +1.6
778,515 - -0.5

Or see this region's nucleotide sequence