Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1332

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9699 and 9700 are separated by 562 nucleotides mRNA_1331: 9699 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 11,969 to 15,219 9699 mRNA_1332: 9700 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 15,782 to 19,108 9700

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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15,354 - +0.4
15,355 - -2.0
15,359 + +2.1
15,512 - -1.4
15,519 + +0.4
15,580 + +0.1
15,637 + -0.7
15,648 + +0.1
15,654 - -1.5
15,656 - -0.5
15,657 + -1.3
15,663 - +0.4
15,665 - +0.6
15,665 + +0.6
15,667 + -0.6
15,671 + +2.3
15,683 + -1.9
15,684 + +1.2
15,699 + +0.6
15,713 + -1.0
15,792 - +1.1
15,857 + +0.7
15,996 - +0.9
16,078 + -1.7
16,087 - -1.0
16,089 + -2.1
16,122 + 9700 mRNA_1332 0.10 -2.0
16,280 - 9700 mRNA_1332 0.15 +0.8
16,363 - 9700 mRNA_1332 0.17 -0.7
16,505 - 9700 mRNA_1332 0.22 -1.9
16,505 - 9700 mRNA_1332 0.22 -0.9
16,546 + 9700 mRNA_1332 0.23 -1.0
16,581 + 9700 mRNA_1332 0.24 -0.4
16,581 + 9700 mRNA_1332 0.24 +1.0
16,899 + 9700 mRNA_1332 0.34 -1.0
16,980 - 9700 mRNA_1332 0.36 +0.2
17,024 - 9700 mRNA_1332 0.37 -0.7
17,288 - 9700 mRNA_1332 0.45 +1.4
17,370 - 9700 mRNA_1332 0.48 +0.3
17,548 + 9700 mRNA_1332 0.53 +0.1
17,574 - 9700 mRNA_1332 0.54 +2.3
17,841 - 9700 mRNA_1332 0.62 +2.6
17,865 + 9700 mRNA_1332 0.63 +0.3
17,957 + 9700 mRNA_1332 0.65 -0.5
18,002 + 9700 mRNA_1332 0.67 -0.1
18,511 - 9700 mRNA_1332 0.82 -1.3
18,550 - 9700 mRNA_1332 0.83 -0.4
18,573 + 9700 mRNA_1332 0.84 +0.7
18,882 - +1.6
19,111 - +0.1
19,235 - +1.5
19,262 - -0.9
19,291 + +1.0
19,296 - +0.1
19,304 - +0.7
19,406 - -0.7
19,412 - -0.3
19,414 - +2.0
19,420 - -0.6
19,422 + -0.6
19,434 - +0.9
19,442 + -2.0
19,452 + -0.4
19,456 - -0.6
19,461 - +1.2
19,480 - -0.4
19,494 + -0.9
19,495 - +0.3
19,496 + -0.0
19,596 - +0.0
19,625 + -0.4
19,626 + +0.4
19,708 - +1.7
19,769 - -2.1
19,769 - +0.4
19,856 + -0.7
19,859 + +1.5
19,899 - +0.8

Or see this region's nucleotide sequence