Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1337

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9704 and 9705 are separated by 99 nucleotides9705 and 9706 are separated by 469 nucleotides mRNA_1336: 9704 - K01850 E5.4.99.5 chorismate mutase, at 27,527 to 28,944 9704 mRNA_1337: 9705 - K17732 PMPCB, MAS1 mitochondrial-processing peptidase subunit beta, at 29,044 to 31,153 9705 mRNA_1338: 9706 - SUPERFAMILY--SSF52047, at 31,623 to 33,145 9706

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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28,983 - -0.8
28,998 - -1.3
29,011 - +0.7
29,034 - +0.1
31,204 + +0.2
31,259 + +1.3
31,264 - +0.4
31,362 + +1.7
31,634 + +3.0
31,951 - 9706 mRNA_1338 0.22 -1.3
32,104 + 9706 mRNA_1338 0.32 +0.1
32,107 - 9706 mRNA_1338 0.32 -0.8

Or see this region's nucleotide sequence