Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1406

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1406: 9774 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 195,890 to 197,396 9774

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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195,108 + -0.6
195,111 - -0.3
195,246 - +1.1
195,263 - -0.6
195,408 + +1.5
195,437 - +0.0
195,446 + +1.0
195,447 + +1.4
195,448 - +0.3
195,454 + +0.5
195,458 - -0.0
195,470 + -0.1
195,471 + -0.1
195,476 + -1.3
195,487 - +1.6
195,487 - +0.2
195,489 - +0.9
195,491 - -0.8
195,497 + -0.2
195,507 + -0.8
195,510 - -1.3
195,512 + +1.1
195,522 - -0.4
195,529 - +1.7
195,535 + -0.1
195,539 + +1.5
195,543 + -0.2
195,551 + +1.1
195,554 - +0.8
195,554 - +1.0
195,554 - -1.9
195,555 + +0.4
195,571 + -0.3
195,575 + -0.4
195,584 + +0.1
195,591 - -0.0
195,591 - +0.8
195,623 + -0.9
195,636 - +1.8
195,636 - -0.2
195,742 - +0.0
195,760 + -0.3
195,796 - -0.2
195,884 - +0.2
196,009 - +0.2
196,201 - 9774 mRNA_1406 0.21 +0.1
196,212 + 9774 mRNA_1406 0.21 +1.1
196,219 - 9774 mRNA_1406 0.22 +0.9
196,368 + 9774 mRNA_1406 0.32 +0.6
196,382 - 9774 mRNA_1406 0.33 -0.1
196,499 + 9774 mRNA_1406 0.40 +0.5
196,602 + 9774 mRNA_1406 0.47 +0.8
196,649 - 9774 mRNA_1406 0.50 -0.1
196,768 - 9774 mRNA_1406 0.58 -0.1
197,073 + 9774 mRNA_1406 0.79 +0.0
197,228 + 9774 mRNA_1406 0.89 +0.1
197,349 - -0.5
197,497 - -0.5
197,509 - +0.5
198,111 - +0.9
198,275 + -0.0

Or see this region's nucleotide sequence