Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1426

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9793 and 9794 are separated by 301 nucleotides9794 and 9795 are separated by 283 nucleotides mRNA_1425: 9793 - HMMPfam-Protein of unknown function (DUF4449)-PF14613,SUPERFAMILY--SSF55394, at 253,226 to 256,985 9793 mRNA_1426: 9794 - Hypothetical Protein, at 257,287 to 258,707 9794 mRNA_1427: 9795 - Hypothetical Protein, at 258,991 to 261,200 9795

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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256,413 - 9793 mRNA_1425 0.85 +1.3
256,440 - 9793 mRNA_1425 0.85 +2.1
256,534 + 9793 mRNA_1425 0.88 -1.4
256,993 - -0.4
257,627 + 9794 mRNA_1426 0.24 +0.4
257,783 + 9794 mRNA_1426 0.35 +2.2
258,123 + 9794 mRNA_1426 0.59 +1.0
258,235 - 9794 mRNA_1426 0.67 +3.7
258,332 - 9794 mRNA_1426 0.74 +0.0
258,775 - +0.2
258,916 + -0.3

Or see this region's nucleotide sequence