Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1480

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9848 and 9849 are separated by 126 nucleotides mRNA_1480: 9848 - KOG0254 Predicted transporter (major facilitator superfamily), at 403,503 to 404,169 9848 mRNA_1481: 9849 - Hypothetical Protein, at 404,296 to 404,872 9849

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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403,737 + 9848 mRNA_1480 0.35 -0.5
404,021 + 9848 mRNA_1480 0.78 +0.1
404,484 - 9849 mRNA_1481 0.33 +0.8
405,105 + +0.2
405,113 + -0.7
405,113 + +1.8
405,139 + +0.3

Or see this region's nucleotide sequence