Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1486

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9853 and 9854 are separated by 84 nucleotides9854 and 9855 are separated by 641 nucleotides mRNA_1485: 9853 - HMMPfam-WW domain-PF00397,ProSitePatterns-WW/rsp5/WWP domain signature.-PS01159,ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 412,872 to 413,936 9853 mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414,021 to 419,409 9854 mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420,051 to 423,071 9855

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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413,277 - 9853 mRNA_1485 0.38 +0.0
413,446 - 9853 mRNA_1485 0.54 -2.2
413,574 - 9853 mRNA_1485 0.66 -0.1
413,645 + 9853 mRNA_1485 0.73 +0.2
413,710 + 9853 mRNA_1485 0.79 +0.4
413,843 - -0.2
413,907 + -0.9
414,189 - +0.7
414,190 + -1.3
414,242 + +0.0
414,471 + -1.5
414,871 - 9854 mRNA_1486 0.16 -0.2
415,018 + 9854 mRNA_1486 0.19 -1.0
415,042 + 9854 mRNA_1486 0.19 +0.3
415,049 - 9854 mRNA_1486 0.19 -0.3
415,203 + 9854 mRNA_1486 0.22 +0.1
415,322 - 9854 mRNA_1486 0.24 +1.6
415,467 - 9854 mRNA_1486 0.27 -0.7
415,496 - 9854 mRNA_1486 0.27 +0.7
415,509 + 9854 mRNA_1486 0.28 +1.8
415,539 + 9854 mRNA_1486 0.28 -0.3
415,545 - 9854 mRNA_1486 0.28 -0.3
415,705 - 9854 mRNA_1486 0.31 +0.3
415,912 + 9854 mRNA_1486 0.35 -2.1
415,938 - 9854 mRNA_1486 0.36 -2.2
415,943 - 9854 mRNA_1486 0.36 +0.1
416,025 - 9854 mRNA_1486 0.37 +0.6
416,067 + 9854 mRNA_1486 0.38 -0.6
416,215 - 9854 mRNA_1486 0.41 +0.6
416,392 + 9854 mRNA_1486 0.44 +0.1
416,529 - 9854 mRNA_1486 0.47 -0.2
416,530 + 9854 mRNA_1486 0.47 -0.4
416,690 + 9854 mRNA_1486 0.50 +2.0
416,730 - 9854 mRNA_1486 0.50 +0.1
416,743 - 9854 mRNA_1486 0.51 +0.2
416,754 + 9854 mRNA_1486 0.51 +0.3
417,131 + 9854 mRNA_1486 0.58 +1.5
417,184 + 9854 mRNA_1486 0.59 -0.2
417,268 + 9854 mRNA_1486 0.60 +0.9
417,301 - 9854 mRNA_1486 0.61 +0.1
417,366 - 9854 mRNA_1486 0.62 +1.0
417,812 + 9854 mRNA_1486 0.70 -0.7
417,931 + 9854 mRNA_1486 0.73 -0.8
417,984 + 9854 mRNA_1486 0.74 -0.2
418,175 - 9854 mRNA_1486 0.77 -0.2
418,283 - 9854 mRNA_1486 0.79 -0.6
418,345 + 9854 mRNA_1486 0.80 -0.0
418,634 - 9854 mRNA_1486 0.86 +0.7
418,790 + 9854 mRNA_1486 0.88 -1.4
418,828 - 9854 mRNA_1486 0.89 +0.5
419,060 + +0.5
419,064 - -0.0
419,129 - +0.6
419,222 + -0.1
419,388 - -1.8
419,393 + -0.9
419,479 - +2.1
419,488 + -1.8
419,532 - -0.6
419,537 - +0.1
419,545 + -1.4
419,682 - -1.0
419,702 + -0.4
419,785 + -0.1
419,840 + -0.2

Or see this region's nucleotide sequence