Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1488

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9855 and 9856 are separated by 258 nucleotides9856 and 9857 are separated by 572 nucleotides mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420,051 to 423,071 9855 mRNA_1488: 9856 - K15371 GDH2 glutamate dehydrogenase, at 423,330 to 427,670 9856 mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428,243 to 429,095 9857

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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423,352 - -1.3
423,472 - -1.5
423,604 - +1.2
423,724 - -1.0
423,778 + 9856 mRNA_1488 0.10 -1.8
423,835 + 9856 mRNA_1488 0.12 -1.0
424,172 + 9856 mRNA_1488 0.19 +1.0
424,221 - 9856 mRNA_1488 0.21 -0.2
424,416 - 9856 mRNA_1488 0.25 -0.9
424,520 + 9856 mRNA_1488 0.27 +2.4
424,601 + 9856 mRNA_1488 0.29 +0.7
424,906 - 9856 mRNA_1488 0.36 -0.1
425,060 + 9856 mRNA_1488 0.40 +1.7
425,061 - 9856 mRNA_1488 0.40 +0.6
425,496 + 9856 mRNA_1488 0.50 -0.3
425,697 + 9856 mRNA_1488 0.55 +0.9
425,708 - 9856 mRNA_1488 0.55 +1.3
425,820 + 9856 mRNA_1488 0.57 -0.4
425,823 - 9856 mRNA_1488 0.57 -1.2
426,112 - 9856 mRNA_1488 0.64 -0.2
426,517 - 9856 mRNA_1488 0.73 +0.7
426,649 - 9856 mRNA_1488 0.76 +0.5
427,144 - 9856 mRNA_1488 0.88 -0.0
427,153 + 9856 mRNA_1488 0.88 +0.3
427,159 + 9856 mRNA_1488 0.88 +0.5
427,238 - +1.2
427,238 + -0.0
427,239 + +0.9
427,263 + -0.1
427,264 - +2.1
427,264 + +0.8
427,282 + -0.0
427,291 + +0.4
427,426 + +0.2
427,438 + -0.2
427,438 - -0.1
427,455 - -0.2
427,468 + -0.1
427,518 + +0.3
427,544 - +0.1
427,575 + +0.5
427,576 - -0.5
427,580 + +0.5
427,598 + +0.3
427,703 - -0.6
427,719 - +1.1
427,725 - -0.7
427,730 - -0.2
427,730 - -0.7
427,746 - +2.5
427,766 - -2.5
427,766 + -0.5
427,773 + -1.2
427,774 + -1.6
427,907 - -0.2
427,948 + -2.4
427,949 + -0.7
427,952 + +0.3
427,991 + -0.4
428,272 + +0.8
428,361 - 9857 mRNA_1489 0.14 +0.5
428,405 + 9857 mRNA_1489 0.19 -0.6
428,499 + 9857 mRNA_1489 0.30 -0.0

Or see this region's nucleotide sequence