Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1490

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9857 and 9858 are separated by 416 nucleotides mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428,243 to 429,095 9857 mRNA_1490: 9858 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 429,512 to 431,122 9858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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428,793 + 9857 mRNA_1489 0.64 -0.5
428,802 + 9857 mRNA_1489 0.66 -1.5
429,226 + +0.1
429,364 - +0.0
429,381 + +2.1
429,389 - -1.6
429,389 + +3.1
429,393 - -1.4
429,413 + -1.9
429,513 - -1.0
429,567 - -0.3
429,809 + 9858 mRNA_1490 0.18 +0.9
429,962 - 9858 mRNA_1490 0.28 -0.1
429,995 - 9858 mRNA_1490 0.30 +0.6
430,109 - 9858 mRNA_1490 0.37 -1.8
430,578 + 9858 mRNA_1490 0.66 +0.2
430,684 - 9858 mRNA_1490 0.73 -0.5
430,685 + 9858 mRNA_1490 0.73 -0.4
430,849 - 9858 mRNA_1490 0.83 -0.3
430,881 - 9858 mRNA_1490 0.85 -1.7
431,002 + +0.7
431,008 + +0.4
431,010 - +0.5
431,014 - -0.1
431,014 - -3.2
431,160 + -0.8
431,165 - -0.2
431,180 - -0.7
431,183 + +0.2
431,186 - +0.2
431,190 + +0.0
431,200 - -1.3
431,204 + +0.0
431,207 + -0.5
431,208 + +0.3
431,216 + -0.4
431,219 - -0.6
431,222 + +1.4
431,223 + +1.4
431,230 + +1.7
431,231 - +0.3
431,235 + -0.8
431,242 + -0.0
431,250 - +0.2
431,250 - +0.5
431,250 + -0.5
431,269 + +0.2
431,292 - +0.5
431,293 + +0.5
431,293 + -1.0
431,303 - +0.2
431,337 - +0.5
431,340 + +0.0
431,342 + -1.6
431,395 - +0.7
431,486 + -0.2
431,496 + +0.5
431,498 - +1.4
431,519 - -0.3
431,521 + -0.3
431,529 + +0.2
431,569 + -0.5
431,640 - -0.5
431,643 + -0.0
431,647 + +0.8
431,653 + -0.4
431,658 - -2.2
431,797 - +2.7
431,807 + +3.4
431,918 + +1.0
431,936 - +0.1
431,957 + +1.7
432,095 + -2.2

Or see this region's nucleotide sequence